Drug Nutrient Depletion Guide

Proton Pump Inhibitors (PPIs): What It Depletes and How to Replenish

Proton Pump Inhibitors (PPIs) (Prilosec, Nexium, Protonix, Prevacid) is associated with clinically documented depletion of 5 key nutrients. Below you'll find the mechanism, clinical evidence, and evidence-based replenishment protocols for each.

This page is educational content based on published clinical trials. All supplement recommendations should be discussed with your prescribing physician before implementation. Evidence ratings follow the same RCT-first methodology used across the full Evidence Based Longevity database.
5 Documented Depletions · RCT Evidence
1
Magnesium (Glycinate)
Critical Depletion Risk
How It Depletes

PPIs reduce gastric acid needed for magnesium absorption in the duodenum. The FDA issued a black box warning in 2011 for hypomagnesemia in PPI users. Risk increases significantly after 1+ year of use.

Clinical Evidence

FDA Drug Safety Communication (2011); Cundy & Mackay (2011) — 13 cases of severe hypomagnesemia in PPI users

Symptoms of Deficiency

Muscle cramps, tremors, cardiac arrhythmia, hypertension, fatigue, anxiety

Evidence-Based Replenishment

Magnesium bisglycinate 300–400mg daily. Monitor serum magnesium every 6 months with long-term PPI use.

View on Fullscript: Thorne Magnesium Bisglycinate

Discuss with your physician before adjusting supplementation. This is educational content, not medical advice.

2
Vitamin B12
Critical Depletion Risk
How It Depletes

B12 absorption requires gastric acid to cleave it from food proteins. PPIs suppress acid production, dramatically reducing food-bound B12 absorption. Crystalline B12 in supplements bypasses this.

Clinical Evidence

Lam et al. (2013) JAMA — 65% increased risk of B12 deficiency with 2+ years PPI use

Symptoms of Deficiency

Cognitive decline, peripheral neuropathy, fatigue, elevated homocysteine

Evidence-Based Replenishment

Methylcobalamin 1,000–2,000mcg sublingual daily — sublingual bypasses gastric acid requirement.

View on Fullscript: Thorne Methylcobalamin 1mg

Discuss with your physician before adjusting supplementation. This is educational content, not medical advice.

3
Zinc
Moderate Depletion Risk
How It Depletes

Gastric acid is required for zinc ionization and absorption. PPI use reduces zinc bioavailability by 40–50%.

Clinical Evidence

Sturniolo et al. (1991) — significant zinc depletion with acid suppression therapy

Symptoms of Deficiency

Immune suppression, wound healing delay, taste/smell changes, skin issues

Evidence-Based Replenishment

Zinc bisglycinate 15–30mg daily with food.

View on Fullscript: Thorne Zinc Picolinate 15mg

Discuss with your physician before adjusting supplementation. This is educational content, not medical advice.

4
Vitamin C
Moderate Depletion Risk
How It Depletes

Ascorbic acid (Vitamin C) in the stomach is converted from dietary sources partly via acid-dependent mechanisms. PPI users show lower gastric and serum Vitamin C.

Clinical Evidence

Rune et al. (1998) — significantly lower gastric Vitamin C concentrations in PPI vs. non-PPI users

Symptoms of Deficiency

Immune impairment, oxidative stress, slower tissue repair

Evidence-Based Replenishment

Buffered Vitamin C (sodium ascorbate) 500–1,000mg daily.

View on Fullscript: Doctor's Best Vitamin C with Quali-C

Discuss with your physician before adjusting supplementation. This is educational content, not medical advice.

5
Iron
Moderate Depletion Risk
How It Depletes

Non-heme iron (from plants) requires an acidic environment for conversion to absorbable ferrous form. PPI use impairs this conversion.

Clinical Evidence

Hutchinson et al. (2007) — significantly impaired iron absorption with acid suppression

Symptoms of Deficiency

Fatigue, anemia, cold intolerance, cognitive fog

Evidence-Based Replenishment

Monitor serum ferritin. If supplementing, use ferrous bisglycinate — better tolerated and more absorbable than ferrous sulfate.

View on Fullscript: Thorne Iron Bisglycinate

Discuss with your physician before adjusting supplementation. This is educational content, not medical advice.

Taking Proton Pump Inhibitors (PPIs)? Build Your Replenishment Stack.

Our 13-question quiz accounts for your medications, health goals, and risk factors — and outputs a personalized supplement protocol rated against published clinical trials.

Take the Free Quiz